Immunoinformatics

PI/Head: Bernett LEE, Ph.D.
Bernett_Lee@immunol.a-star.edu.sg

For more information regarding the SIgN Immunoinformatics Platform and services, please download a copy of our brochure here.

The Immunoinformatics Platform uses state-of-the-art methods to analyse SIgN data and deliver pipelines and workflows to accelerate research

Overview

The Immunoinformatics platform uses state-of-the-art methods to analyse SIgN data and deliver pipelines and workflows to accelerate research. The Immunoinformatics team handles not only the "usual" datasets, such as microarray and next-generation sequencing data, but also various heterogeneous datasets, such as those derived by flow cytometry, ELISA and Luminex assays and assesses the cross-correlation between these data (Figure 1).

Technologies and Applications

Accelrys Pipeline Pilot
Tibco Spotfire
MySQL
R
Metacore/GeneGo
Ingenuity Pathway Analysis
Oncomine
Transfac
Tuxedo suite for NGS analysis

Our equipment includes:

31 node, 8 cores/node, 48Gb RAM/node linux cluster
12 core, 64Gb RAM, 18 Tb RAID5 linux workstation
6 core, 48Gb RAM, 35 Tb RAID5 Solaris database server and backup storage


Figure 1: Examples of data analysis


Figure 1: Data analysis workflow

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